Cellori

Cellori (Cell Origin) is a fast and robust algorithm for clustered nuclei segmentation in fluorescence microscopy images. It segments nuclei by calculating local thresholds to isolate the foreground, splitting clustered nuclei via local maxima analysis, and then merge correcting regions to account for potential oversegmentation. Masks are obtained using the watershed algorithm.

For a comprehensive walk-through, follow our Guided Segmentation Tutorial.

Examples

Raw Image	Segmented Image

Contents

• Usage
  • Installation
  • Guided Segmentation Tutorial
• Cellori API
  • Cellori Class
  • Helper Functions